A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
/home/runner/work/pmultiqc/pmultiqc/data
pmultiqc
pmultiqc is a MultiQC module to show the pipeline performance of mass spectrometry based quantification pipelines such as nf-core/quantms, MaxQuant, and DIA-NN.URL: https://github.com/bigbio/pmultiqc
Summary and HeatMap
Summary Table
| #Peptides Quantified | #Proteins Quantified |
|---|---|
| 3725 | 765 |
Pipeline Result Statistics
| Sample Name | #Peptide IDs | #Unambiguous Peptide IDs | #Modified Peptide IDs | #Protein (group) IDs |
|---|---|---|---|---|
| 20221028_FL_Lu_SV_Set12_A1 | 2871 | 2871 | 402 | 793 |
| 20221028_FL_Lu_SV_Set12_A2 | 2877 | 2877 | 393 | 786 |
| 20221028_FL_Lu_SV_Set12_A3 | 2513 | 2513 | 336 | 688 |
| 20221028_FL_Lu_SV_Set12_A4 | 3001 | 3001 | 411 | 835 |
| 20221028_FL_Lu_SV_Set12_A5 | 2941 | 2941 | 413 | 818 |
| 20221028_FL_Lu_SV_Set12_A6 | 3020 | 3020 | 419 | 837 |
| 20221028_FL_Lu_SV_Set12_B1 | 2641 | 2641 | 350 | 759 |
| 20221028_FL_Lu_SV_Set12_B2 | 2766 | 2766 | 361 | 805 |
| 20221028_FL_Lu_SV_Set12_B3 | 3043 | 3043 | 408 | 888 |
| 20221028_FL_Lu_SV_Set12_B4 | 2887 | 2887 | 387 | 832 |
| 20221028_FL_Lu_SV_Set12_B5 | 2336 | 2336 | 313 | 669 |
| 20221028_FL_Lu_SV_Set12_B6 | 2517 | 2517 | 340 | 744 |
Identification Summary
Number of Peptides identified Per Protein
ProteinGroups Count
Peptide ID Count
Modifications Per Raw File
MS1 Analysis
Total Ion Chromatograms
MS1 Base Peak Chromatograms
MS1 Peaks
General stats for MS1 information
| File | Acquisition Date Time | log10(Total Current) | log10(Scan Current) |
|---|---|---|---|
| 20221028_FL_Lu_SV_Set12_A1 | 2022-10-29 22:11:31 | 11.7957 | 11.3888 |
| 20221028_FL_Lu_SV_Set12_A2 | 2022-10-30 01:33:52 | 11.8052 | 34.2775 |
| 20221028_FL_Lu_SV_Set12_A3 | 2022-10-30 13:47:37 | 11.7305 | 11.3256 |
| 20221028_FL_Lu_SV_Set12_A4 | 2022-10-30 06:40:43 | 11.8220 | 11.4029 |
| 20221028_FL_Lu_SV_Set12_A5 | 2022-10-30 09:03:01 | 11.8009 | 11.3846 |
| 20221028_FL_Lu_SV_Set12_A6 | 2022-10-30 01:56:09 | 11.8099 | 11.4013 |
| 20221028_FL_Lu_SV_Set12_B1 | 2022-10-29 12:42:17 | 11.7506 | 11.3651 |
| 20221028_FL_Lu_SV_Set12_B2 | 2022-10-30 11:25:17 | 11.8033 | 11.3784 |
| 20221028_FL_Lu_SV_Set12_B3 | 2022-10-29 15:04:34 | 11.8335 | 11.4320 |
| 20221028_FL_Lu_SV_Set12_B4 | 2022-10-30 04:18:27 | 11.8097 | 11.4051 |
| 20221028_FL_Lu_SV_Set12_B5 | 2022-10-29 17:26:54 | 11.6971 | 11.3046 |
| 20221028_FL_Lu_SV_Set12_B6 | 2022-10-29 19:49:11 | 11.7172 | 11.3146 |